GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| BLCA | cis | rs9815354 | 1 | rs9846634 | chr3:41894049 | ULK4 | chr3:41288091-42003660:- | 0.64 | 9.5 | 2.29E-19 | Diastolic blood pressure |
| BLCA | cis | rs9815354 | 1 | rs9847006 | chr3:41755359 | ULK4 | chr3:41288091-42003660:- | 0.61 | 9.48 | 2.76E-19 | Diastolic blood pressure |
| BLCA | cis | rs9815354 | 1 | rs9847975 | chr3:41786904 | ULK4 | chr3:41288091-42003660:- | 0.62 | 9.23 | 1.84E-18 | Diastolic blood pressure |
| BLCA | cis | rs9815354 | 1 | rs9848754 | chr3:41753647 | ULK4 | chr3:41288091-42003660:- | 0.67 | 9.83 | 1.73E-20 | Diastolic blood pressure |
| BLCA | cis | rs10935120 | 1 | rs9850015 | chr3:134269541 | ANAPC13 | chr3:134196547-134204865:- | 0.5 | 7.97 | 1.89E-14 | Height |
| BLCA | cis | rs10935120 | 1 | rs9850015 | chr3:134269541 | CEP63 | chr3:134204575-134293852:+ | 0.24 | 4.09 | 5.33E-5 | Height |
| BLCA | cis | rs10935120 | 1 | rs9851441 | chr3:134315091 | ANAPC13 | chr3:134196547-134204865:- | 0.47 | 7.43 | 7.28E-13 | Height |
| BLCA | cis | rs9815354 | 1 | rs9852303 | chr3:41759525 | ULK4 | chr3:41288091-42003660:- | 0.64 | 9.9 | 9.78E-21 | Diastolic blood pressure |
| BLCA | cis | rs10935120 | 1 | rs9854299 | chr3:134206728 | ANAPC13 | chr3:134196547-134204865:- | 0.48 | 7.68 | 1.35E-13 | Height |
| BLCA | cis | rs10935120 | 1 | rs9854299 | chr3:134206728 | CEP63 | chr3:134204575-134293852:+ | 0.23 | 4.03 | 6.79E-5 | Height |
| BLCA | cis | rs9815354 | 1 | rs9854833 | chr3:41775577 | ULK4 | chr3:41288091-42003660:- | 0.64 | 9.46 | 3.23E-19 | Diastolic blood pressure |
| BLCA | cis | rs9815354 | 1 | rs9854838 | chr3:41805670 | ULK4 | chr3:41288091-42003660:- | 0.63 | 9.7 | 4.95E-20 | Diastolic blood pressure |
| BLCA | cis | rs9815354 | 1 | rs9855965 | chr3:41860508 | ULK4 | chr3:41288091-42003660:- | 0.63 | 9.78 | 2.63E-20 | Diastolic blood pressure |
| BLCA | cis | rs9815354 | 1 | rs9856088 | chr3:41860482 | ULK4 | chr3:41288091-42003660:- | 0.63 | 9.78 | 2.63E-20 | Diastolic blood pressure |
| BLCA | cis | rs9815354 | 1 | rs9856633 | chr3:42013850 | ULK4 | chr3:41288091-42003660:- | 0.61 | 9.4 | 5.26E-19 | Diastolic blood pressure |